BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB038F05LP1|AL430573
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1459 1644 0.0
>3x_Contig1459
Length = 6711
Score = 1644 bits (826), Expect = 0.0
Identities = 872/888 (98%), Gaps = 2/888 (0%)
Strand = Plus / Minus
Query: 1 ggttgacagtagaaagaacgcgaaggcaacttaaactcattagcattgcatttcttttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 ggttgacagtagaaagaacgcgaaggcaacttaaactcattagcattgcatttcttttga 1906
Query: 61 gttcctgaaag-catgtacaacccaaatattgtctgatttcttagtaagtgaaatcagat 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 gttcctgaaaggcatgtacaacccaaatattgtctgatttcttagtaagtgaaatcagat 1846
Query: 120 atttggtggcaaaaggaacaataagttcccgtctgcaccggtttctatggggaaacgcca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 atttggtggcaaaaggaacaataagttcccgtctgcaccggtttctatggggaaacgcca 1786
Query: 180 attaatgggaccatttttaaaagggaaatgaaaaaaaaaaatgattgaaaaatgaaaact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1785 attaatgggaccatttttaaaagggaaatgaaaaaaaaaaatgattgaaaaatgaaaact 1726
Query: 240 agcatattgccccagattcgcatgtagcacgagaggatactgagatttgaaaagggccgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1725 agcatattgccccagattcgcatgtagcacgagaggatactgagatttgaaaaggtccgt 1666
Query: 300 ttacagcatccacatgcaaaagcggtccacggcgaaattaccggaaattgcaatgccaat 359
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 1665 ttacagcatccacatgcaaaagctgtccacggcgatattactggaaattgcaatgccaat 1606
Query: 360 gccaatgctactggcgaccggaaacggattatgaggagcctagttagtttggcatgaaaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 gccaatgctactggcgaccggaaacggattatgaggagcctagttagtttggcatgaaat 1546
Query: 420 aaagggaccaccagatctctacgtaccattgttgttcttgcgacctttttttttggtctt 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 aaaggtaccaccagatctctacgtaccattgttgttcttgcgacctttttttttggtctt 1486
Query: 480 tatttattcattaaccagcaaaactgtgtaatactctattaagatcagaagattcagtag 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 ta-ttattcattaaccagcaaaactgtgtaatactctattaagatcagaagattcagtag 1427
Query: 540 acaaatggctccaagcattttcatcctttctgtcatatcaatcgtccacctccctctcca 599
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 actaatggctctaagcattttcatcctttctgtcatatcaatcgtccacctccctctcca 1367
Query: 600 tccatcatcccagactctctttctaaaagtcgccaaatcgttatacattgtccattagat 659
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1366 tccatcatcccagactctctttttaaaagtcgccaaatcgttatacattgtccattagat 1307
Query: 660 ytaggagctatttttggtacaattttcccacagctatttcattwttacaagatatcaaca 719
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1306 ctaggagctatttttggtacaattttcccacagctatttcattattacaagatatcaaca 1247
Query: 720 ggcaagcacaacccagctttgatgtttkttaattgcctttttttctcgcccctcacggta 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1246 ggcaagcacaacccagctttgatgtttgttaattgcctttttttctcgcccctcacggta 1187
Query: 780 ccttgcattagatttggacaatgaacgaaaaatataaaaytgaaaaattagacaatgcgg 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1186 ccttgcattagatttggacaatgaacgaaaaatataaaactgaaaaattagacaatgcgg 1127
Query: 840 acgagaaatgggagacctggctaaaaaggggaaaawtcagaacagaaa 887
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1126 acgagaaatgggagacctggctaaaaaggggaaaaatcagaacagaaa 1079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,393
Number of Sequences: 1807
Number of extensions: 12393
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)